List of HIVE-STM publications

This page contains a list of all publications (I am aware of) which use and cite the HIVE-STM program. The program has been distributed to over 200 researchers worldwide as of 2015. If I missed your work, just let me know and I’ll add it to the list.

Own work

  1. Phys. Rev. B 77, 241308(R) (2008), doi: 10.1103/PhysRevB.77.241308 <local ref.>
  2. Phys. Rev. B 81, 035333 (2010), doi: 10.1103/PhysRevB.81.035333 <local ref.>
  3. Phys. Rev. B 81, 085410 (2010), doi: 10.1103/PhysRevB.81.085410 <local ref.>
  4. Phys. Rev. B 81, 235434 (2010), doi: 10.1103/PhysRevB.81.235434<local ref.>
  5. J. Phys.: Condens. Matter 26(13), 133001 (2014), doi: 10.1088/0953-8984/26/13/133001 <local ref.>

HIVE-STM users

  1. “Self-Assembly of (S)-Glutamic Acid on Ag(100): A Combined LT-STM and Ab Initio Investigation“, M. Smerieri, L. Vattuone, D. Costa, F. Tielens and L. SavioLangmuir 26(10), 7208-7215 (2010), doi: 10.1021/la904331d
  2. Reversible Transition between Thermodynamically Stable Phases with Low Density of Oxygen Vacancies on the SrTiO3(110) Surface“, Fengmiao Li, Zhiming Wang, Sheng Meng, Yongbao Sun, Jinlong Yang, Qinlin Guo, and Jiandong Guo, Phys. Rev. Lett. 107(3), 036103 (2011), doi: 10.1103/PhysRevLett.107.036103
  3. Structural and electronic properties of the graphene/Al/Ni(111) intercalation system“, E. N. Voloshina, A. Generalov, M. Weser, S. Böttcher, K. Horn and Yu S. Dedkov, New J. Phys. 13, 113028 (2011), doi: 10.1088/1367-2630/13/11/113028
  4. Electronic Fingerprints of DNA Bases on Graphene“, Towfiq Ahmed, Svetlana Kilina, Tanmoy Das, Jason T. Haraldsen, John J. Rehr, and Alexander V. Balatsky, Nano Lett. 12(2), 927-931 (2012), doi:10.1021/nl2039315
  5. Graphene on Rh(111): Scanning tunneling and atomic force microscopies studies“, E. N. Voloshina, Yu. S. Dedkov, S. Torbrügge, A. Thissen and M. Fonin, Appl. Phys. Lett. 100(24), 241606 (2012), doi: 10.1063/1.4729549
  6. Ab Initio Modeling of alpha-GeTe(111) Surfaces“, Volker L. Deringer, Marck Lumeij, and Richard Dronskowski, J. Phys. Chem. C 116(29), 15801-15811(2012), doi:10.1021/jp304455z
  7. Electronic structure and imaging contrast of graphene moire on metals“, E. N. Voloshina, E. Fertitta, A. Garhofer, F. Mittendorfer, M. Fonin, A. Thissen and Yu. S. Dedkov, Scientific Reports 3, 1072 (2013), doi: 10.1038/srep01072
  8. The Role of Hydrogen Bonding and Proton Transfer in the Formation of Uracil Networks on the Gold (100) Surface: A Density Functional Theory Approach“, Simona Irrera, Alberto Roldan, Gustavo Portalone, and Nora H. De Leeuw, J. Phys. Chem. C 117(8), 3949-3957 (2013), doi: 10.1021/jp3094353
  9. Characterization of Two-Dimensional Chiral Self-Assemblies L- and D-Methionine on Au(111)“, Vincent Humblot, Frederik Tielens, Noelia B. Luque, Harout Hampartsoumian, Christophe Méthivier, and Claire-Marie Pradier, Langmuir 30(1), 203-212 (2014), doi: 10.1021/la404262m
  10. In Situ Fabrication Of Quasi-Free-Standing Epitaxial Graphene Nanoflakes On Gold“, Philipp Leicht, Lukas Zielke, Samuel Bouvron, Riko Moroni, Elena Voloshina, Lukas Hammerschmidt, Yuriy S. Dedkov, and Mikhail Fonin, ACS Nano 8(4), 3735-3742 (2014), doi: 10.1021/nn500396c
  11. Impact of intrinsic atomic defects on the electronic structure of MoS2 monolayers“, Santosh K.C., Roberto C. Longo, Rafik Addou, Robert M. Wallace and Kyeongjae Cho, Nanotechnology 25(37), 375703 (2014), doi: 10.1088/0957-4484/25/37/375703
  12. A DFT study of the structures, stabilities and redox behaviour of the major surfaces of magnetite Fe3O4“, David Santos-Carballal, Alberto Roldan, Ricardo Grau-Crespo and Nora H. de Leeuw, Phys. Chem. Chem. Phys. 16(39), 21082-21097 (2014), doi: 10.1039/c4cp00529e
  13. Unexpected Reconstruction of the alpha-Boron (111) Surface“, (2014), Xiang-Feng Zhou, Artem R. Oganov, Xi Shao, Qiang Zhu, and Hui-Tian Wang, Phys. Rev. Lett.113(17), 176101 (2014), doi: 10.1103/PhysRevLett.113.176101 (STM image in the Supplementary Information)
  14. Formation of a G-Quartet-Fe Complex and Modulation of Electronic and Magnetic Properties of the Fe Center“, Likun Wang, Huihui Kong, Chi Zhang, Qiang Sun, Liangliang Cai, Qinggang Tan, Flemming Besenbacher, and Wei Xu, ACS Nano 8(11), 11799-11805 (2014)doi: 10.1021/nn5054156
  15. Interlayer Cation Exchange Stabilizes Polar Perovskite Surfaces“,Daniel E. E. Deacon-Smith,  David O. Scanlon,C. Richard A. Catlow, Alexey A. Sokol,Scott M. Woodley, Adv. Mater. 26(42), 7252-7256 (2014)doi: 10.1002/adma.201401858
  16. Band-gap tuning of graphene by Be doping and Be, B co-doping: a DFT study“, Saif Ullah, Akhtar Hussain, Waqar Adil Syed, Muhammad Adnan Saqlain,  Idrees Ahmad, Ortwin Leenaerts and Altaf Karim, RSC Adv. 5(69), 55762-55773 (2015)doi: 10.1039/c5ra08061d
  17. Theoretical studies of heteroatom-doping in TiO2 to enhance the electron injection in dye-sensitized solar cells“, Li Hao, Fu-Quan Bai, Chui-Peng Kong, Shamsa Bibi and Hong-Xing Zhang, RSC Adv. 5(97), 79868-79873 (2015)doi: 10.1039/c5ra15282h
  18. Precursor Adsorption on Copper Surfaces as the First Step during the Deposition of Copper: A Density Functional Study with van der Waals Correction“, Yasheng Maimaiti and Simon D. Elliott, J. Phys. Chem. C 119(17), 9375-9385 (2015), doi: 10.1021/acs.jpcc.5b01402
  19. Hydrazine network on Cu(111) surface: A Density Functional Theory approach“, Saeedeh S. Tafreshi, Alberto Roldan, Nora H. de Leeuw, Surf. Sci. 637, 140-148 (2015), doi: 10.1016/j.susc.2015.04.001
  20. Stable line defects in silicene“, Dibyajyoti Ghosh, Prakash Parida, and Swapan K. Pati, Phys. Rev. B 92(19), 195136 (2015), doi: 10.1103/PhysRevB.92.195136
  21. Covalent pathways in engineering h-BN supported graphene“, Ouyang Bin, and Song Jun, CARBON 98, 449-456 (2016), doi: 10.1016/j.carbon.2015.10.100
  22. Real-Space Evidence of Rare Guanine Tautomer Induced by Water“, Chi Zhang, Lei Xie, Yuanqi Ding, Qiang Sun, and Wei Xu, ACS Nano 10(3), 3776-3782 (2016), doi: 10.1021/acsnano.6b00393
  23. The Surface Structure of Cu2O(100)“, Markus Soldemo, Joakim Halldin Stenlid, Zahra Besharat, Milad Ghadami Yazdi, Anneli Önsten, Christofer Leygraf, Mats Göthelid, Tore Brinck, and Jonas Weissenrieder, J. Phys. Chem. C 120(8), 4373-4381 (2016), doi: 10.1021/acs.jpcc.5b11350
  24. In search of non-conventional surface oxidic motifs of Cu on Au(111)“, Taehun Lee, Yonghyuk Lee, Kisung Kang and Aloysius Soon, Phys. Chem. Chem. Phys. 18(10), 7349-7358 (2016), doi: 10.1039/c5cp07932b
  25. Double-Stranded Water on Stepped Platinum Surfaces“, Manuel J. Kolb, Rachael G. Farber, Jonathan Derouin, Cansin Badan, Federico Calle-Vallejo, Ludo B. F. Juurlink, Daniel R. Killelea, and Marc T. M. Koper, Phys. Rev. Lett. 116(13), 136101 (2016), doi: 10.1103/PhysRevLett.116.136101
  26. A density functional theory study of uranium-doped thoria and uranium adatoms on the major surfaces of thorium dioxide“, Ashley E. Shields, David Santos-Carballal, and Nora H. de Leeuw, J. Nuclear Materials. 473, 99-111 (2016), doi: 10.1016/j.jnucmat.2016.02.009
  27. One-dimensional nanoclustering of the Cu(100) surface under CO gas in the mbar pressure range“, Baran Eren, Danylo Zherebetskyy, Yibo Hao, Laerte L. Patera, Lin-Wang Wang, Gabor A. Somorjai, and Miquel Salmeron, Surf. Sci. 651, 210-214 (2016), doi: 10.1016/j.susc.2016.04.016
  28. Substrate-Induced Nanoscale Undulations of Borophene on Silver“, Zhuhua Zhang, Andrew J. Mannix, Zhili Hu, Brian Kiraly, Nathan P. Guisinger, Mark C. Hersam, and Boris I. Yakobson, Nano Lett. 16(10), 6622-6627 (2016), doi: 10.1021/acs.nanolett.6b03349
  29. Clocking Surface-Reaction by In-Plane Product Rotation“, Kelvin Anggara, Kai Huang, Lydie Leung, Avisek Chatterjee, Fang Cheng, and John C. Polanyi, J. Am. Chem. Soc 138(23), 7377-7385 (2016), doi: 10.1021/jacs.6b03101 (Hidden in SI)
  30. Bond selectivity in electron-induced reaction due to directed recoil on an anisotropic substrate“, Kelvin Anggara, Kai Huang, Lydie Leung, Avisek Chatterjee, Fang Cheng, and John C. Polanyi, Nature Communications 7, 13690 (2016), doi: 10.1038/ncomms13690